diff --git a/Python/03_Image_Details.ipynb b/Python/03_Image_Details.ipynb index 7a687cc5..e0bb0eef 100644 --- a/Python/03_Image_Details.ipynb +++ b/Python/03_Image_Details.ipynb @@ -1436,7 +1436,7 @@ "metadata": {}, "outputs": [], "source": [ - "%matplotlib widget\n", + "%matplotlib ipympl\n", "import gui\n", "\n", "gui.RegistrationPointDataAquisition(\n", diff --git a/Python/04_Image_Display.ipynb b/Python/04_Image_Display.ipynb index 77e9ac82..a28c2639 100644 --- a/Python/04_Image_Display.ipynb +++ b/Python/04_Image_Display.ipynb @@ -57,7 +57,7 @@ "source": [ "import SimpleITK as sitk\n", "\n", - "%matplotlib widget\n", + "%matplotlib ipympl\n", "import matplotlib.pyplot as plt\n", "import gui\n", "\n", diff --git a/Python/05_Results_Visualization.ipynb b/Python/05_Results_Visualization.ipynb index 721e45ba..b63e49bb 100644 --- a/Python/05_Results_Visualization.ipynb +++ b/Python/05_Results_Visualization.ipynb @@ -70,7 +70,7 @@ "metadata": {}, "outputs": [], "source": [ - "%matplotlib widget\n", + "%matplotlib ipympl\n", "\n", "import numpy as np\n", "import itertools\n", diff --git a/Python/21_Transforms_and_Resampling.ipynb b/Python/21_Transforms_and_Resampling.ipynb index ec9c83c1..47ae7833 100644 --- a/Python/21_Transforms_and_Resampling.ipynb +++ b/Python/21_Transforms_and_Resampling.ipynb @@ -774,7 +774,7 @@ "outputs": [], "source": [ "# Temporarily change the matplotlib back-end to enable mouse interaction\n", - "%matplotlib widget\n", + "%matplotlib ipympl\n", "intensity_profiles_image = sitk.ReadImage(fdata(\"training_001_ct.mha\"))\n", "point_gui = gui.PointDataAquisition(image=intensity_profiles_image);" ] diff --git a/Python/30_Segmentation_Region_Growing.ipynb b/Python/30_Segmentation_Region_Growing.ipynb index 2beea88f..e9694780 100644 --- a/Python/30_Segmentation_Region_Growing.ipynb +++ b/Python/30_Segmentation_Region_Growing.ipynb @@ -60,9 +60,9 @@ "metadata": {}, "outputs": [], "source": [ - "# To use interactive plots (mouse clicks, zooming, panning) we use the notebook back end. We want our graphs\n", - "# to be embedded in the notebook, inline mode, this combination is defined by the magic \"%matplotlib widget\".\n", - "%matplotlib widget\n", + "# To use interactive plots (mouse clicks, zooming, panning) we use the ipympl back end. We want our graphs\n", + "# to be embedded in the notebook, inline mode, this combination is defined by the magic \"%matplotlib ipympl\".\n", + "%matplotlib ipympl\n", "\n", "import SimpleITK as sitk\n", "\n", diff --git a/Python/33_Segmentation_Thresholding_Edge_Detection.ipynb b/Python/33_Segmentation_Thresholding_Edge_Detection.ipynb index 0f67cfcb..6d71134c 100644 --- a/Python/33_Segmentation_Thresholding_Edge_Detection.ipynb +++ b/Python/33_Segmentation_Thresholding_Edge_Detection.ipynb @@ -67,7 +67,7 @@ "%run update_path_to_download_script\n", "from downloaddata import fetch_data as fdata\n", "\n", - "%matplotlib widget\n", + "%matplotlib ipympl\n", "import gui\n", "import matplotlib.pyplot as plt\n", "\n", diff --git a/Python/35_Segmentation_Shape_Analysis.ipynb b/Python/35_Segmentation_Shape_Analysis.ipynb index 1c71aece..d007baa7 100644 --- a/Python/35_Segmentation_Shape_Analysis.ipynb +++ b/Python/35_Segmentation_Shape_Analysis.ipynb @@ -25,7 +25,7 @@ "import SimpleITK as sitk\n", "import pandas as pd\n", "\n", - "%matplotlib widget\n", + "%matplotlib ipympl\n", "\n", "import matplotlib.pyplot as plt\n", "import gui\n", diff --git a/Python/36_Microscopy_Colocalization_Distance_Analysis.ipynb b/Python/36_Microscopy_Colocalization_Distance_Analysis.ipynb index 713dd1f6..333758fe 100644 --- a/Python/36_Microscopy_Colocalization_Distance_Analysis.ipynb +++ b/Python/36_Microscopy_Colocalization_Distance_Analysis.ipynb @@ -25,7 +25,7 @@ "import numpy as np\n", "import pandas as pd\n", "\n", - "%matplotlib widget\n", + "%matplotlib ipympl\n", "import gui\n", "\n", "%run update_path_to_download_script\n", diff --git a/Python/63_Registration_Initialization.ipynb b/Python/63_Registration_Initialization.ipynb index e3858d1b..917ecc6f 100644 --- a/Python/63_Registration_Initialization.ipynb +++ b/Python/63_Registration_Initialization.ipynb @@ -62,7 +62,7 @@ "%run update_path_to_download_script\n", "from downloaddata import fetch_data as fdata\n", "\n", - "%matplotlib widget\n", + "%matplotlib ipympl\n", "import gui\n", "\n", "\n", diff --git a/Python/67_Registration_Semiautomatic_Homework.ipynb b/Python/67_Registration_Semiautomatic_Homework.ipynb index 012ef38e..a1312344 100644 --- a/Python/67_Registration_Semiautomatic_Homework.ipynb +++ b/Python/67_Registration_Semiautomatic_Homework.ipynb @@ -70,9 +70,9 @@ "metadata": {}, "outputs": [], "source": [ - "# To use interactive plots (mouse clicks, zooming, panning) we use the notebook back end. We want our graphs\n", - "# to be embedded in the notebook, inline mode, this combination is defined by the magic \"%matplotlib widget\".\n", - "%matplotlib widget\n", + "# To use interactive plots (mouse clicks, zooming, panning) we use the ipympl back end. We want our graphs\n", + "# to be embedded in the notebook, inline mode, this combination is defined by the magic \"%matplotlib ipympl\".\n", + "%matplotlib ipympl\n", "\n", "import numpy as np\n", "import SimpleITK as sitk\n", diff --git a/Python/68_Registration_Errors.ipynb b/Python/68_Registration_Errors.ipynb index 161d7d92..82f15e16 100644 --- a/Python/68_Registration_Errors.ipynb +++ b/Python/68_Registration_Errors.ipynb @@ -82,7 +82,7 @@ "import numpy as np\n", "import copy\n", "\n", - "%matplotlib widget\n", + "%matplotlib ipympl\n", "from gui import PairedPointDataManipulation, display_errors\n", "import matplotlib.pyplot as plt\n", "from registration_utilities import registration_errors" diff --git a/Python/69_x-ray-panorama.ipynb b/Python/69_x-ray-panorama.ipynb index 2ed024b6..83f5c34c 100755 --- a/Python/69_x-ray-panorama.ipynb +++ b/Python/69_x-ray-panorama.ipynb @@ -80,7 +80,7 @@ "import os.path\n", "import copy\n", "\n", - "%matplotlib widget\n", + "%matplotlib ipympl\n", "import gui\n", "import matplotlib.pyplot as plt\n", "\n", diff --git a/Python/70_Data_Augmentation.ipynb b/Python/70_Data_Augmentation.ipynb index 6cfcc93d..385a6ef2 100755 --- a/Python/70_Data_Augmentation.ipynb +++ b/Python/70_Data_Augmentation.ipynb @@ -60,7 +60,7 @@ "import SimpleITK as sitk\n", "import numpy as np\n", "\n", - "%matplotlib widget\n", + "%matplotlib ipympl\n", "import gui\n", "\n", "# utility method that either downloads data from the Girder repository or\n", diff --git a/Python/71_Trust_But_Verify.ipynb b/Python/71_Trust_But_Verify.ipynb index 51116781..afc13d0c 100644 --- a/Python/71_Trust_But_Verify.ipynb +++ b/Python/71_Trust_But_Verify.ipynb @@ -71,7 +71,7 @@ "import hashlib\n", "import tempfile\n", "\n", - "%matplotlib widget\n", + "%matplotlib ipympl\n", "import matplotlib.pyplot as plt\n", "import ipywidgets as widgets\n", "\n", diff --git a/tests/additional_dictionary.txt b/tests/additional_dictionary.txt index 7dd32576..c9ff423d 100644 --- a/tests/additional_dictionary.txt +++ b/tests/additional_dictionary.txt @@ -1,3 +1,4 @@ +ipympl ACM ANTSNeighborhoodCorrelation API