diff --git a/.dockerignore b/.dockerignore
new file mode 100644
index 000000000..1d17dae13
--- /dev/null
+++ b/.dockerignore
@@ -0,0 +1 @@
+.venv
diff --git a/.github/workflows/backend.yaml b/.github/workflows/backend.yaml
index fdd43a128..efbf1db7b 100644
--- a/.github/workflows/backend.yaml
+++ b/.github/workflows/backend.yaml
@@ -28,7 +28,7 @@ jobs:
uses: docker/setup-buildx-action@v2
-
name: Checkout
- uses: actions/checkout@v2
+ uses: actions/checkout@v4
-
name: Login to DockerHub
if: github.event_name != 'pull_request'
@@ -85,7 +85,8 @@ jobs:
name: Build and push
uses: docker/build-push-action@v3
with:
- context: ./backend
+ context: .
+ file: ./backend/Dockerfile
platforms: linux/amd64,linux/arm64
push: ${{ github.event_name != 'pull_request' }}
tags: ${{ steps.backendMeta.outputs.tags }}
@@ -95,20 +96,20 @@ jobs:
name: Build and push
uses: docker/build-push-action@v3
with:
- context: ./backend
+ context: .
+ file: ./backend/heartbeat.Dockerfile
platforms: linux/amd64,linux/arm64
push: ${{ github.event_name != 'pull_request' }}
tags: ${{ steps.heartbeatMeta.outputs.tags }}
- file: ./backend/heartbeat.Dockerfile
labels: ${{ steps.heartbeatMeta.outputs.labels }}
-
name: Build and push
uses: docker/build-push-action@v3
with:
- context: ./backend
+ context: .
+ file: ./backend/messages.Dockerfile
platforms: linux/amd64,linux/arm64
push: ${{ github.event_name != 'pull_request' }}
tags: ${{ steps.messagesMeta.outputs.tags }}
- file: ./backend/messages.Dockerfile
labels: ${{ steps.messagesMeta.outputs.labels }}
diff --git a/.github/workflows/codegen.yaml b/.github/workflows/codegen.yaml
index 419c01071..2ea37fb91 100644
--- a/.github/workflows/codegen.yaml
+++ b/.github/workflows/codegen.yaml
@@ -17,38 +17,26 @@ jobs:
timeout-minutes: 10
runs-on: ubuntu-latest
- strategy:
- fail-fast: false
- matrix:
- node:
- - "14"
-
steps:
- - name: Set up QEMU
- uses: docker/setup-qemu-action@v2
-
- - name: Set up Docker Buildx
- uses: docker/setup-buildx-action@v2
-
- name: Checkout
- uses: actions/checkout@v3
+ uses: actions/checkout@v4
- name: Build Backend no push
uses: docker/build-push-action@v3
with:
- context: ./backend
+ context: .
+ file: ./backend/Dockerfile
platforms: linux/amd64
push: false
tags: github-action
- name: Start containers
- run: docker compose -f "docker-compose.test.yml" up -d --build
+ run: docker compose -f "docker-compose.yml" up -d --build
- # setup node
- name: Install node
uses: actions/setup-node@v3
with:
- node-version: ${{ matrix.node }}
+ node-version: 16
- name: Install dependencies
working-directory: frontend
@@ -73,4 +61,4 @@ jobs:
- name: Stop containers
if: always()
- run: docker compose -f "docker-compose.test.yml" down
+ run: docker compose -f "docker-compose.yml" down
diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml
index 3dcdee2ae..972e64bc0 100644
--- a/.github/workflows/pytest.yml
+++ b/.github/workflows/pytest.yml
@@ -1,4 +1,5 @@
name: Pytest
+
on: push
defaults:
@@ -6,33 +7,18 @@ defaults:
working-directory: backend
jobs:
- test:
+ uv-example:
+ name: python
runs-on: ubuntu-latest
- timeout-minutes: 10
steps:
- - name: Check out repository code
- uses: actions/checkout@v2
-
- - name: Setup Python
- uses: actions/setup-python@v4
- with:
- python-version: "3.9"
-
- - name: Install pipenv
- run: |
- python -m pip install --upgrade pipenv wheel
+ - uses: actions/checkout@v4
- - id: cache-pipenv
- uses: actions/cache@v3
- with:
- path: ~/.local/share/virtualenvs
- key: ${{ runner.os }}-pipenv-${{ hashFiles('**/Pipfile.lock') }}
+ - name: Install uv
+ uses: astral-sh/setup-uv@v5
- - name: Install dependencies
- if: steps.cache-pipenv.outputs.cache-hit != 'true'
- run: |
- pipenv install --deploy --dev
+ - name: Install the project
+ run: uv sync --all-extras --dev
- name: Start env
run: docker compose -f ../docker-compose.dev.yml up -d
@@ -42,6 +28,5 @@ jobs:
run: sleep 60s
shell: bash
- - name: Run test suite
- run: |
- pipenv run pytest -v
+ - name: Run tests
+ run: uv run pytest app/tests/
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index fa2045e5e..92f48b8cc 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -3,7 +3,7 @@ repos:
hooks:
- id: extract-openapi
name: extract-openapi
- entry: pipenv run extract-openapi
+ entry: python backend/extract-openapi.py app.main:app
language: system
pass_filenames: false
- repo: local
@@ -25,17 +25,8 @@ repos:
name: prettier
entry: bash -c "cd frontend && npx prettier src --write"
language: system
- - repo: https://github.com/psf/black
- rev: 23.11.0
- hooks:
- - id: black
- - repo: https://github.com/PyCQA/isort
- rev: 5.12.0
- hooks:
- - id: isort
- args: [ "--profile=black" ]
- repo: https://github.com/pre-commit/pre-commit-hooks
- rev: v4.5.0
+ rev: v5.0.0
hooks:
- id: check-yaml
exclude: deployments/kubernetes/charts
@@ -43,11 +34,12 @@ repos:
exclude: 'openapi.json|frontend/src/openapi/v2/'
- id: trailing-whitespace
exclude: 'openapi.json|frontend/src/openapi/v2/'
- - repo: https://github.com/shellcheck-py/shellcheck-py
- rev: v0.9.0.6
- hooks:
- - id: shellcheck
- - repo: https://github.com/PyCQA/flake8
- rev: 6.1.0
- hooks:
- - id: flake8
+ - repo: https://github.com/astral-sh/ruff-pre-commit
+ # Ruff version.
+ rev: v0.9.4
+ hooks:
+ # Run the linter.
+ - id: ruff
+ args: [ --fix ]
+ # Run the formatter.
+ - id: ruff-format
diff --git a/.python-version b/.python-version
new file mode 100644
index 000000000..c8cfe3959
--- /dev/null
+++ b/.python-version
@@ -0,0 +1 @@
+3.10
diff --git a/Pipfile b/Pipfile
deleted file mode 100644
index d07ce614c..000000000
--- a/Pipfile
+++ /dev/null
@@ -1,46 +0,0 @@
-[[source]]
-url = "https://pypi.org/simple"
-verify_ssl = true
-name = "pypi"
-
-[packages]
-alabaster = "==0.7.12"
-babel = "==2.9.1"
-certifi = "==2021.10.8"
-charset-normalizer = "==2.0.12"
-commonmark = "==0.9.1"
-docutils = "==0.17.1"
-idna = "==3.3"
-imagesize = "==1.3.0"
-importlib-metadata = "==4.11.3"
-jinja2 = "==3.0.3"
-markupsafe = "==2.1.0"
-packaging = "==21.3"
-pyenchant = "==3.2.2"
-pygments = "==2.11.2"
-pyparsing = "==3.0.7"
-pytz = "==2021.3"
-recommonmark = "*"
-requests = "==2.27.1"
-snowballstemmer = "==2.2.0"
-sphinx = "==4.4.0"
-sphinxcontrib-applehelp = "==1.0.2"
-sphinxcontrib-devhelp = "==1.0.2"
-sphinxcontrib-htmlhelp = "==2.0.0"
-sphinxcontrib-jsmath = "==1.0.1"
-sphinxcontrib-qthelp = "==1.0.3"
-sphinxcontrib-serializinghtml = "==1.1.5"
-sphinxcontrib-spelling = "==7.3.2"
-urllib3 = "==1.26.8"
-zipp = "==3.7.0"
-sphinx-autobuild = "*"
-sphinx-material = "*"
-mkdocs-material = "*"
-
-[dev-packages]
-
-[requires]
-python_version = "3.9"
-
-[scripts]
-extract-openapi = "python backend/extract-openapi.py app.main:app"
diff --git a/Pipfile.lock b/Pipfile.lock
deleted file mode 100644
index b24c1b47a..000000000
--- a/Pipfile.lock
+++ /dev/null
@@ -1,669 +0,0 @@
-{
- "_meta": {
- "hash": {
- "sha256": "43b0b65d8f7811c0c7b6de379edff9b5d4f2efc26e608a08dfaf5365848ba796"
- },
- "pipfile-spec": 6,
- "requires": {
- "python_version": "3.9"
- },
- "sources": [
- {
- "name": "pypi",
- "url": "https://pypi.org/simple",
- "verify_ssl": true
- }
- ]
- },
- "default": {
- "alabaster": {
- "hashes": [
- "sha256:446438bdcca0e05bd45ea2de1668c1d9b032e1a9154c2c259092d77031ddd359",
- "sha256:a661d72d58e6ea8a57f7a86e37d86716863ee5e92788398526d58b26a4e4dc02"
- ],
- "index": "pypi",
- "version": "==0.7.12"
- },
- "babel": {
- "hashes": [
- "sha256:ab49e12b91d937cd11f0b67cb259a57ab4ad2b59ac7a3b41d6c06c0ac5b0def9",
- "sha256:bc0c176f9f6a994582230df350aa6e05ba2ebe4b3ac317eab29d9be5d2768da0"
- ],
- "index": "pypi",
- "version": "==2.9.1"
- },
- "beautifulsoup4": {
- "hashes": [
- "sha256:74e3d1928edc070d21748185c46e3fb33490f22f52a3addee9aee0f4f7781051",
- "sha256:b80878c9f40111313e55da8ba20bdba06d8fa3969fc68304167741bbf9e082ed"
- ],
- "markers": "python_full_version >= '3.6.0'",
- "version": "==4.12.3"
- },
- "certifi": {
- "hashes": [
- "sha256:78884e7c1d4b00ce3cea67b44566851c4343c120abd683433ce934a68ea58872",
- "sha256:d62a0163eb4c2344ac042ab2bdf75399a71a2d8c7d47eac2e2ee91b9d6339569"
- ],
- "index": "pypi",
- "version": "==2021.10.8"
- },
- "charset-normalizer": {
- "hashes": [
- "sha256:2857e29ff0d34db842cd7ca3230549d1a697f96ee6d3fb071cfa6c7393832597",
- "sha256:6881edbebdb17b39b4eaaa821b438bf6eddffb4468cf344f09f89def34a8b1df"
- ],
- "index": "pypi",
- "version": "==2.0.12"
- },
- "click": {
- "hashes": [
- "sha256:ae74fb96c20a0277a1d615f1e4d73c8414f5a98db8b799a7931d1582f3390c28",
- "sha256:ca9853ad459e787e2192211578cc907e7594e294c7ccc834310722b41b9ca6de"
- ],
- "markers": "python_version >= '3.7'",
- "version": "==8.1.7"
- },
- "colorama": {
- "hashes": [
- "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44",
- "sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6"
- ],
- "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4, 3.5, 3.6'",
- "version": "==0.4.6"
- },
- "commonmark": {
- "hashes": [
- "sha256:452f9dc859be7f06631ddcb328b6919c67984aca654e5fefb3914d54691aed60",
- "sha256:da2f38c92590f83de410ba1a3cbceafbc74fee9def35f9251ba9a971d6d66fd9"
- ],
- "index": "pypi",
- "version": "==0.9.1"
- },
- "css-html-js-minify": {
- "hashes": [
- "sha256:3da9d35ac0db8ca648c1b543e0e801d7ca0bab9e6bfd8418fee59d5ae001727a",
- "sha256:4704e04a0cd6dd56d61bbfa3bfffc630da6b2284be33519be0b456672e2a2438",
- "sha256:4a9f11f7e0496f5284d12111f3ba4ff5ff2023d12f15d195c9c48bd97013746c"
- ],
- "version": "==2.5.5"
- },
- "docutils": {
- "hashes": [
- "sha256:686577d2e4c32380bb50cbb22f575ed742d58168cee37e99117a854bcd88f125",
- "sha256:cf316c8370a737a022b72b56874f6602acf974a37a9fba42ec2876387549fc61"
- ],
- "index": "pypi",
- "version": "==0.17.1"
- },
- "ghp-import": {
- "hashes": [
- "sha256:8337dd7b50877f163d4c0289bc1f1c7f127550241988d568c1db512c4324a619",
- "sha256:9c535c4c61193c2df8871222567d7fd7e5014d835f97dc7b7439069e2413d343"
- ],
- "version": "==2.1.0"
- },
- "idna": {
- "hashes": [
- "sha256:84d9dd047ffa80596e0f246e2eab0b391788b0503584e8945f2368256d2735ff",
- "sha256:9d643ff0a55b762d5cdb124b8eaa99c66322e2157b69160bc32796e824360e6d"
- ],
- "index": "pypi",
- "version": "==3.3"
- },
- "imagesize": {
- "hashes": [
- "sha256:1db2f82529e53c3e929e8926a1fa9235aa82d0bd0c580359c67ec31b2fddaa8c",
- "sha256:cd1750d452385ca327479d45b64d9c7729ecf0b3969a58148298c77092261f9d"
- ],
- "index": "pypi",
- "version": "==1.3.0"
- },
- "importlib-metadata": {
- "hashes": [
- "sha256:1208431ca90a8cca1a6b8af391bb53c1a2db74e5d1cef6ddced95d4b2062edc6",
- "sha256:ea4c597ebf37142f827b8f39299579e31685c31d3a438b59f469406afd0f2539"
- ],
- "index": "pypi",
- "version": "==4.11.3"
- },
- "jinja2": {
- "hashes": [
- "sha256:077ce6014f7b40d03b47d1f1ca4b0fc8328a692bd284016f806ed0eaca390ad8",
- "sha256:611bb273cd68f3b993fabdc4064fc858c5b47a973cb5aa7999ec1ba405c87cd7"
- ],
- "index": "pypi",
- "version": "==3.0.3"
- },
- "livereload": {
- "hashes": [
- "sha256:776f2f865e59fde56490a56bcc6773b6917366bce0c267c60ee8aaf1a0959869",
- "sha256:ad4ac6f53b2d62bb6ce1a5e6e96f1f00976a32348afedcb4b6d68df2a1d346e4"
- ],
- "version": "==2.6.3"
- },
- "lxml": {
- "hashes": [
- "sha256:13521a321a25c641b9ea127ef478b580b5ec82aa2e9fc076c86169d161798b01",
- "sha256:14deca1460b4b0f6b01f1ddc9557704e8b365f55c63070463f6c18619ebf964f",
- "sha256:16018f7099245157564d7148165132c70adb272fb5a17c048ba70d9cc542a1a1",
- "sha256:16dd953fb719f0ffc5bc067428fc9e88f599e15723a85618c45847c96f11f431",
- "sha256:19a1bc898ae9f06bccb7c3e1dfd73897ecbbd2c96afe9095a6026016e5ca97b8",
- "sha256:1ad17c20e3666c035db502c78b86e58ff6b5991906e55bdbef94977700c72623",
- "sha256:22b7ee4c35f374e2c20337a95502057964d7e35b996b1c667b5c65c567d2252a",
- "sha256:24ef5a4631c0b6cceaf2dbca21687e29725b7c4e171f33a8f8ce23c12558ded1",
- "sha256:25663d6e99659544ee8fe1b89b1a8c0aaa5e34b103fab124b17fa958c4a324a6",
- "sha256:262bc5f512a66b527d026518507e78c2f9c2bd9eb5c8aeeb9f0eb43fcb69dc67",
- "sha256:280f3edf15c2a967d923bcfb1f8f15337ad36f93525828b40a0f9d6c2ad24890",
- "sha256:2ad3a8ce9e8a767131061a22cd28fdffa3cd2dc193f399ff7b81777f3520e372",
- "sha256:2befa20a13f1a75c751f47e00929fb3433d67eb9923c2c0b364de449121f447c",
- "sha256:2f37c6d7106a9d6f0708d4e164b707037b7380fcd0b04c5bd9cae1fb46a856fb",
- "sha256:304128394c9c22b6569eba2a6d98392b56fbdfbad58f83ea702530be80d0f9df",
- "sha256:342e95bddec3a698ac24378d61996b3ee5ba9acfeb253986002ac53c9a5f6f84",
- "sha256:3aeca824b38ca78d9ee2ab82bd9883083d0492d9d17df065ba3b94e88e4d7ee6",
- "sha256:3d184e0d5c918cff04cdde9dbdf9600e960161d773666958c9d7b565ccc60c45",
- "sha256:3e3898ae2b58eeafedfe99e542a17859017d72d7f6a63de0f04f99c2cb125936",
- "sha256:3eea6ed6e6c918e468e693c41ef07f3c3acc310b70ddd9cc72d9ef84bc9564ca",
- "sha256:3f14a4fb1c1c402a22e6a341a24c1341b4a3def81b41cd354386dcb795f83897",
- "sha256:436a943c2900bb98123b06437cdd30580a61340fbdb7b28aaf345a459c19046a",
- "sha256:4946e7f59b7b6a9e27bef34422f645e9a368cb2be11bf1ef3cafc39a1f6ba68d",
- "sha256:49a9b4af45e8b925e1cd6f3b15bbba2c81e7dba6dce170c677c9cda547411e14",
- "sha256:4f8b0c78e7aac24979ef09b7f50da871c2de2def043d468c4b41f512d831e912",
- "sha256:52427a7eadc98f9e62cb1368a5079ae826f94f05755d2d567d93ee1bc3ceb354",
- "sha256:5e53d7e6a98b64fe54775d23a7c669763451340c3d44ad5e3a3b48a1efbdc96f",
- "sha256:5fcfbebdb0c5d8d18b84118842f31965d59ee3e66996ac842e21f957eb76138c",
- "sha256:601f4a75797d7a770daed8b42b97cd1bb1ba18bd51a9382077a6a247a12aa38d",
- "sha256:61c5a7edbd7c695e54fca029ceb351fc45cd8860119a0f83e48be44e1c464862",
- "sha256:6a2a2c724d97c1eb8cf966b16ca2915566a4904b9aad2ed9a09c748ffe14f969",
- "sha256:6d48fc57e7c1e3df57be5ae8614bab6d4e7b60f65c5457915c26892c41afc59e",
- "sha256:6f11b77ec0979f7e4dc5ae081325a2946f1fe424148d3945f943ceaede98adb8",
- "sha256:704f5572ff473a5f897745abebc6df40f22d4133c1e0a1f124e4f2bd3330ff7e",
- "sha256:725e171e0b99a66ec8605ac77fa12239dbe061482ac854d25720e2294652eeaa",
- "sha256:7cfced4a069003d8913408e10ca8ed092c49a7f6cefee9bb74b6b3e860683b45",
- "sha256:7ec465e6549ed97e9f1e5ed51c657c9ede767bc1c11552f7f4d022c4df4a977a",
- "sha256:82bddf0e72cb2af3cbba7cec1d2fd11fda0de6be8f4492223d4a268713ef2147",
- "sha256:82cd34f1081ae4ea2ede3d52f71b7be313756e99b4b5f829f89b12da552d3aa3",
- "sha256:843b9c835580d52828d8f69ea4302537337a21e6b4f1ec711a52241ba4a824f3",
- "sha256:877efb968c3d7eb2dad540b6cabf2f1d3c0fbf4b2d309a3c141f79c7e0061324",
- "sha256:8b9f19df998761babaa7f09e6bc169294eefafd6149aaa272081cbddc7ba4ca3",
- "sha256:8cf5877f7ed384dabfdcc37922c3191bf27e55b498fecece9fd5c2c7aaa34c33",
- "sha256:8d2900b7f5318bc7ad8631d3d40190b95ef2aa8cc59473b73b294e4a55e9f30f",
- "sha256:8d7b4beebb178e9183138f552238f7e6613162a42164233e2bda00cb3afac58f",
- "sha256:8f52fe6859b9db71ee609b0c0a70fea5f1e71c3462ecf144ca800d3f434f0764",
- "sha256:98f3f020a2b736566c707c8e034945c02aa94e124c24f77ca097c446f81b01f1",
- "sha256:9aa543980ab1fbf1720969af1d99095a548ea42e00361e727c58a40832439114",
- "sha256:9b99f564659cfa704a2dd82d0684207b1aadf7d02d33e54845f9fc78e06b7581",
- "sha256:9bcf86dfc8ff3e992fed847c077bd875d9e0ba2fa25d859c3a0f0f76f07f0c8d",
- "sha256:9bd0ae7cc2b85320abd5e0abad5ccee5564ed5f0cc90245d2f9a8ef330a8deae",
- "sha256:9d3c0f8567ffe7502d969c2c1b809892dc793b5d0665f602aad19895f8d508da",
- "sha256:9e5ac3437746189a9b4121db2a7b86056ac8786b12e88838696899328fc44bb2",
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- "version": "==0.7.1"
- },
- "requests": {
- "hashes": [
- "sha256:68d7c56fd5a8999887728ef304a6d12edc7be74f1cfa47714fc8b414525c9a61",
- "sha256:f22fa1e554c9ddfd16e6e41ac79759e17be9e492b3587efa038054674760e72d"
- ],
- "index": "pypi",
- "version": "==2.27.1"
- },
- "six": {
- "hashes": [
- "sha256:1e61c37477a1626458e36f7b1d82aa5c9b094fa4802892072e49de9c60c4c926",
- "sha256:8abb2f1d86890a2dfb989f9a77cfcfd3e47c2a354b01111771326f8aa26e0254"
- ],
- "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
- "version": "==1.16.0"
- },
- "snowballstemmer": {
- "hashes": [
- "sha256:09b16deb8547d3412ad7b590689584cd0fe25ec8db3be37788be3810cbf19cb1",
- "sha256:c8e1716e83cc398ae16824e5572ae04e0d9fc2c6b985fb0f900f5f0c96ecba1a"
- ],
- "index": "pypi",
- "version": "==2.2.0"
- },
- "soupsieve": {
- "hashes": [
- "sha256:5663d5a7b3bfaeee0bc4372e7fc48f9cff4940b3eec54a6451cc5299f1097690",
- "sha256:eaa337ff55a1579b6549dc679565eac1e3d000563bcb1c8ab0d0fefbc0c2cdc7"
- ],
- "markers": "python_version >= '3.8'",
- "version": "==2.5"
- },
- "sphinx": {
- "hashes": [
- "sha256:5da895959511473857b6d0200f56865ed62c31e8f82dd338063b84ec022701fe",
- "sha256:6caad9786055cb1fa22b4a365c1775816b876f91966481765d7d50e9f0dd35cc"
- ],
- "index": "pypi",
- "version": "==4.4.0"
- },
- "sphinx-autobuild": {
- "hashes": [
- "sha256:63fd87ab7505872a89aef468ce6503f65e794a195f4ae62269db3b85b72d4854",
- "sha256:cb9d2121a176d62d45471624872afc5fad7755ad662738abe400ecf4a7954303"
- ],
- "index": "pypi",
- "version": "==2024.2.4"
- },
- "sphinx-material": {
- "hashes": [
- "sha256:1d7f972cca7ebdfe135e28f18401673306d7c0d036d42c6e3d98b77394e61a60",
- "sha256:eeff5f7d3dc016af32bafdf70c66e671d15c8754dbe0613dfbd629fbed912869"
- ],
- "index": "pypi",
- "version": "==0.0.36"
- },
- "sphinxcontrib-applehelp": {
- "hashes": [
- "sha256:806111e5e962be97c29ec4c1e7fe277bfd19e9652fb1a4392105b43e01af885a",
- "sha256:a072735ec80e7675e3f432fcae8610ecf509c5f1869d17e2eecff44389cdbc58"
- ],
- "index": "pypi",
- "version": "==1.0.2"
- },
- "sphinxcontrib-devhelp": {
- "hashes": [
- "sha256:8165223f9a335cc1af7ffe1ed31d2871f325254c0423bc0c4c7cd1c1e4734a2e",
- "sha256:ff7f1afa7b9642e7060379360a67e9c41e8f3121f2ce9164266f61b9f4b338e4"
- ],
- "index": "pypi",
- "version": "==1.0.2"
- },
- "sphinxcontrib-htmlhelp": {
- "hashes": [
- "sha256:d412243dfb797ae3ec2b59eca0e52dac12e75a241bf0e4eb861e450d06c6ed07",
- "sha256:f5f8bb2d0d629f398bf47d0d69c07bc13b65f75a81ad9e2f71a63d4b7a2f6db2"
- ],
- "index": "pypi",
- "version": "==2.0.0"
- },
- "sphinxcontrib-jsmath": {
- "hashes": [
- "sha256:2ec2eaebfb78f3f2078e73666b1415417a116cc848b72e5172e596c871103178",
- "sha256:a9925e4a4587247ed2191a22df5f6970656cb8ca2bd6284309578f2153e0c4b8"
- ],
- "index": "pypi",
- "version": "==1.0.1"
- },
- "sphinxcontrib-qthelp": {
- "hashes": [
- "sha256:4c33767ee058b70dba89a6fc5c1892c0d57a54be67ddd3e7875a18d14cba5a72",
- "sha256:bd9fc24bcb748a8d51fd4ecaade681350aa63009a347a8c14e637895444dfab6"
- ],
- "index": "pypi",
- "version": "==1.0.3"
- },
- "sphinxcontrib-serializinghtml": {
- "hashes": [
- "sha256:352a9a00ae864471d3a7ead8d7d79f5fc0b57e8b3f95e9867eb9eb28999b92fd",
- "sha256:aa5f6de5dfdf809ef505c4895e51ef5c9eac17d0f287933eb49ec495280b6952"
- ],
- "index": "pypi",
- "version": "==1.1.5"
- },
- "sphinxcontrib-spelling": {
- "hashes": [
- "sha256:1b99cdb1a30271c7080ec5b968dfc243c2540a960afdc4c052cd59dfe8d94c54",
- "sha256:9d66dc4990749c5ac52e7eaf17e82f4dc6b4aff6515d26bbf48821829d41bd02"
- ],
- "index": "pypi",
- "version": "==7.3.2"
- },
- "text-unidecode": {
- "hashes": [
- "sha256:1311f10e8b895935241623731c2ba64f4c455287888b18189350b67134a822e8",
- "sha256:bad6603bb14d279193107714b288be206cac565dfa49aa5b105294dd5c4aab93"
- ],
- "version": "==1.3"
- },
- "tornado": {
- "hashes": [
- "sha256:02ccefc7d8211e5a7f9e8bc3f9e5b0ad6262ba2fbb683a6443ecc804e5224ce0",
- "sha256:10aeaa8006333433da48dec9fe417877f8bcc21f48dda8d661ae79da357b2a63",
- "sha256:27787de946a9cffd63ce5814c33f734c627a87072ec7eed71f7fc4417bb16263",
- "sha256:6f8a6c77900f5ae93d8b4ae1196472d0ccc2775cc1dfdc9e7727889145c45052",
- "sha256:71ddfc23a0e03ef2df1c1397d859868d158c8276a0603b96cf86892bff58149f",
- "sha256:72291fa6e6bc84e626589f1c29d90a5a6d593ef5ae68052ee2ef000dfd273dee",
- "sha256:88b84956273fbd73420e6d4b8d5ccbe913c65d31351b4c004ae362eba06e1f78",
- "sha256:e43bc2e5370a6a8e413e1e1cd0c91bedc5bd62a74a532371042a18ef19e10579",
- "sha256:f0251554cdd50b4b44362f73ad5ba7126fc5b2c2895cc62b14a1c2d7ea32f212",
- "sha256:f7894c581ecdcf91666a0912f18ce5e757213999e183ebfc2c3fdbf4d5bd764e",
- "sha256:fd03192e287fbd0899dd8f81c6fb9cbbc69194d2074b38f384cb6fa72b80e9c2"
- ],
- "markers": "python_version > '2.7'",
- "version": "==6.4"
- },
- "unidecode": {
- "hashes": [
- "sha256:cfdb349d46ed3873ece4586b96aa75258726e2fa8ec21d6f00a591d98806c2f4",
- "sha256:d130a61ce6696f8148a3bd8fe779c99adeb4b870584eeb9526584e9aa091fd39"
- ],
- "version": "==1.3.8"
- },
- "urllib3": {
- "hashes": [
- "sha256:000ca7f471a233c2251c6c7023ee85305721bfdf18621ebff4fd17a8653427ed",
- "sha256:0e7c33d9a63e7ddfcb86780aac87befc2fbddf46c58dbb487e0855f7ceec283c"
- ],
- "index": "pypi",
- "version": "==1.26.8"
- },
- "watchdog": {
- "hashes": [
- "sha256:11e12fafb13372e18ca1bbf12d50f593e7280646687463dd47730fd4f4d5d257",
- "sha256:2895bf0518361a9728773083908801a376743bcc37dfa252b801af8fd281b1ca",
- "sha256:39cb34b1f1afbf23e9562501673e7146777efe95da24fab5707b88f7fb11649b",
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- "sha256:557ba04c816d23ce98a06e70af6abaa0485f6d94994ec78a42b05d1c03dcbd50",
- "sha256:6a4db54edea37d1058b08947c789a2354ee02972ed5d1e0dca9b0b820f4c7f92",
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- "sha256:6a9c71a0b02985b4b0b6d14b875a6c86ddea2fdbebd0c9a720a806a8bbffc69f",
- "sha256:6c47bdd680009b11c9ac382163e05ca43baf4127954c5f6d0250e7d772d2b80c",
- "sha256:6e949a8a94186bced05b6508faa61b7adacc911115664ccb1923b9ad1f1ccf7b",
- "sha256:73c7a935e62033bd5e8f0da33a4dcb763da2361921a69a5a95aaf6c93aa03a87",
- "sha256:76ad8484379695f3fe46228962017a7e1337e9acadafed67eb20aabb175df98b",
- "sha256:8350d4055505412a426b6ad8c521bc7d367d1637a762c70fdd93a3a0d595990b",
- "sha256:87e9df830022488e235dd601478c15ad73a0389628588ba0b028cb74eb72fed8",
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- "sha256:9a03e16e55465177d416699331b0f3564138f1807ecc5f2de9d55d8f188d08c7",
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- "sha256:c17d98799f32e3f55f181f19dd2021d762eb38fdd381b4a748b9f5a36738e935",
- "sha256:c522392acc5e962bcac3b22b9592493ffd06d1fc5d755954e6be9f4990de932b",
- "sha256:d0f9bd1fd919134d459d8abf954f63886745f4660ef66480b9d753a7c9d40927",
- "sha256:d18d7f18a47de6863cd480734613502904611730f8def45fc52a5d97503e5101",
- "sha256:d31481ccf4694a8416b681544c23bd271f5a123162ab603c7d7d2dd7dd901a07",
- "sha256:e3e7065cbdabe6183ab82199d7a4f6b3ba0a438c5a512a68559846ccb76a78ec",
- "sha256:eed82cdf79cd7f0232e2fdc1ad05b06a5e102a43e331f7d041e5f0e0a34a51c4",
- "sha256:f970663fa4f7e80401a7b0cbeec00fa801bf0287d93d48368fc3e6fa32716245",
- "sha256:f9b2fdca47dc855516b2d66eef3c39f2672cbf7e7a42e7e67ad2cbfcd6ba107d"
- ],
- "markers": "python_version >= '3.8'",
- "version": "==4.0.0"
- },
- "zipp": {
- "hashes": [
- "sha256:9f50f446828eb9d45b267433fd3e9da8d801f614129124863f9c51ebceafb87d",
- "sha256:b47250dd24f92b7dd6a0a8fc5244da14608f3ca90a5efcd37a3b1642fac9a375"
- ],
- "index": "pypi",
- "version": "==3.7.0"
- }
- },
- "develop": {}
-}
diff --git a/backend/Dockerfile b/backend/Dockerfile
index afee972ed..a9e39f1ab 100644
--- a/backend/Dockerfile
+++ b/backend/Dockerfile
@@ -1,25 +1,34 @@
-FROM python:3.9
+# Use a Python image with uv pre-installed
+FROM ghcr.io/astral-sh/uv:python3.10-bookworm-slim
-WORKDIR /code
+# Install the project into `/app`
+WORKDIR /app
-# set python env variables
-ENV PYTHONDONTWRITEBYTECODE 1
-ENV PYTHONUNBUFFERED 1
+# Enable bytecode compilation
+ENV UV_COMPILE_BYTECODE=1
-# install pipenv
-RUN pip install pipenv
+# Copy from the cache instead of linking since it's a mounted volume
+ENV UV_LINK_MODE=copy
-# copy required pipenv files
-COPY ./Pipfile ./Pipfile.lock /code/
+# Install the project's dependencies using the lockfile and settings
+RUN --mount=type=cache,target=/root/.cache/uv \
+ --mount=type=bind,source=uv.lock,target=uv.lock \
+ --mount=type=bind,source=pyproject.toml,target=pyproject.toml \
+ uv sync --frozen --no-install-project --no-dev
-# install requirements locally in the project at /code/.venv
-RUN PIPENV_VENV_IN_PROJECT=1 pipenv install --deploy
+# Then, add the rest of the project source code and install it
+# Installing separately from its dependencies allows optimal layer caching
+ADD backend /app
+RUN --mount=type=cache,target=/root/.cache/uv \
+ --mount=type=bind,source=uv.lock,target=uv.lock \
+ --mount=type=bind,source=pyproject.toml,target=pyproject.toml \
+ uv sync --frozen --no-dev
-# add requirements to path
-ENV PATH="/code/.venv/bin:$PATH"
+# Place executables in the environment at the front of the path
+ENV PATH="/app/.venv/bin:$PATH"
-# copy app code at end to make it easier to change code and not have to rebuild requirement layers
-COPY ./app /code/app
+# Reset the entrypoint, don't invoke `uv`
+ENTRYPOINT []
# launch app using uvicorn
# Number of recommended workers is 2 x number_of_cores +1
diff --git a/backend/Pipfile b/backend/Pipfile
deleted file mode 100644
index 4be134492..000000000
--- a/backend/Pipfile
+++ /dev/null
@@ -1,47 +0,0 @@
-[[source]]
-url = "https://pypi.org/simple"
-verify_ssl = true
-name = "pypi"
-
-[packages]
-fastapi = "0.95.1"
-pydantic = "1.10.13"
-uvicorn = "0.21.1"
-motor = "3.1.2"
-mongoengine = "0.27.0"
-beanie = "1.18.0"
-passlib = "1.7.4"
-bcrypt = "4.0.1"
-pyjwt = "2.6.0"
-minio = "7.1.14"
-python-multipart = "0.0.6"
-pipfile = "0.0.2"
-email-validator = "2.0.0.post2"
-python-keycloak = "2.15.3"
-pika = "1.3.1"
-aio-pika = "9.0.5"
-elasticsearch = "8.7.0"
-pipenv = "2023.4.20"
-rocrate = "0.7.0"
-httpx = "0.24.0"
-packaging = "23.1"
-itsdangerous = "2.1.2"
-flake8 = "*"
-pyflakes = "*"
-autoflake = "*"
-isort = "*"
-shellcheck-py = "*"
-pre-commit = "*"
-
-[dev-packages]
-requests = "2.28.2"
-pytest = "7.3.1"
-pytest-asyncio = "0.21.0"
-black = "23.3.0"
-faker = "18.4.0"
-
-[requires]
-python_version = "3.9"
-
-[pipenv]
-allow_prereleases = true
diff --git a/backend/Pipfile.lock b/backend/Pipfile.lock
deleted file mode 100644
index af108f722..000000000
--- a/backend/Pipfile.lock
+++ /dev/null
@@ -1,1846 +0,0 @@
-{
- "_meta": {
- "hash": {
- "sha256": "b1d197d4833a9a1b4546fac3410778467c8113d65806364966e03c4fb009bf7f"
- },
- "pipfile-spec": 6,
- "requires": {
- "python_version": "3.9"
- },
- "sources": [
- {
- "name": "pypi",
- "url": "https://pypi.org/simple",
- "verify_ssl": true
- }
- ]
- },
- "default": {
- "aio-pika": {
- "hashes": [
- "sha256:096add8286019832008baa48e7463d7c0c609953011ec4c3e185f5249760e47b",
- "sha256:48e90b6a901742e8078c306d3a28580a065b16b5178dd50b2399b27b1884b15d"
- ],
- "index": "pypi",
- "markers": "python_version >= '3.7' and python_version < '4.0'",
- "version": "==9.0.5"
- },
- "aiohttp": {
- "hashes": [
- "sha256:0605cc2c0088fcaae79f01c913a38611ad09ba68ff482402d3410bf59039bfb8",
- "sha256:0a158704edf0abcac8ac371fbb54044f3270bdbc93e254a82b6c82be1ef08f3c",
- "sha256:0cbf56238f4bbf49dab8c2dc2e6b1b68502b1e88d335bea59b3f5b9f4c001475",
- "sha256:1732102949ff6087589408d76cd6dea656b93c896b011ecafff418c9661dc4ed",
- "sha256:18f634d540dd099c262e9f887c8bbacc959847cfe5da7a0e2e1cf3f14dbf2daf",
- "sha256:239f975589a944eeb1bad26b8b140a59a3a320067fb3cd10b75c3092405a1372",
- "sha256:2faa61a904b83142747fc6a6d7ad8fccff898c849123030f8e75d5d967fd4a81",
- "sha256:320e8618eda64e19d11bdb3bd04ccc0a816c17eaecb7e4945d01deee2a22f95f",
- "sha256:38d80498e2e169bc61418ff36170e0aad0cd268da8b38a17c4cf29d254a8b3f1",
- "sha256:3916c8692dbd9d55c523374a3b8213e628424d19116ac4308e434dbf6d95bbdd",
- "sha256:393c7aba2b55559ef7ab791c94b44f7482a07bf7640d17b341b79081f5e5cd1a",
- "sha256:3b7b30258348082826d274504fbc7c849959f1989d86c29bc355107accec6cfb",
- "sha256:3fcb4046d2904378e3aeea1df51f697b0467f2aac55d232c87ba162709478c46",
- "sha256:4109adee842b90671f1b689901b948f347325045c15f46b39797ae1bf17019de",
- "sha256:4558e5012ee03d2638c681e156461d37b7a113fe13970d438d95d10173d25f78",
- "sha256:45731330e754f5811c314901cebdf19dd776a44b31927fa4b4dbecab9e457b0c",
- "sha256:4715a9b778f4293b9f8ae7a0a7cef9829f02ff8d6277a39d7f40565c737d3771",
- "sha256:471f0ef53ccedec9995287f02caf0c068732f026455f07db3f01a46e49d76bbb",
- "sha256:4d3ebb9e1316ec74277d19c5f482f98cc65a73ccd5430540d6d11682cd857430",
- "sha256:4ff550491f5492ab5ed3533e76b8567f4b37bd2995e780a1f46bca2024223233",
- "sha256:52c27110f3862a1afbcb2af4281fc9fdc40327fa286c4625dfee247c3ba90156",
- "sha256:55b39c8684a46e56ef8c8d24faf02de4a2b2ac60d26cee93bc595651ff545de9",
- "sha256:5a7ee16aab26e76add4afc45e8f8206c95d1d75540f1039b84a03c3b3800dd59",
- "sha256:5ca51eadbd67045396bc92a4345d1790b7301c14d1848feaac1d6a6c9289e888",
- "sha256:5d6b3f1fabe465e819aed2c421a6743d8debbde79b6a8600739300630a01bf2c",
- "sha256:60cdbd56f4cad9f69c35eaac0fbbdf1f77b0ff9456cebd4902f3dd1cf096464c",
- "sha256:6380c039ec52866c06d69b5c7aad5478b24ed11696f0e72f6b807cfb261453da",
- "sha256:639d0042b7670222f33b0028de6b4e2fad6451462ce7df2af8aee37dcac55424",
- "sha256:66331d00fb28dc90aa606d9a54304af76b335ae204d1836f65797d6fe27f1ca2",
- "sha256:67c3119f5ddc7261d47163ed86d760ddf0e625cd6246b4ed852e82159617b5fb",
- "sha256:694d828b5c41255e54bc2dddb51a9f5150b4eefa9886e38b52605a05d96566e8",
- "sha256:6ae79c1bc12c34082d92bf9422764f799aee4746fd7a392db46b7fd357d4a17a",
- "sha256:702e2c7c187c1a498a4e2b03155d52658fdd6fda882d3d7fbb891a5cf108bb10",
- "sha256:714d4e5231fed4ba2762ed489b4aec07b2b9953cf4ee31e9871caac895a839c0",
- "sha256:7b179eea70833c8dee51ec42f3b4097bd6370892fa93f510f76762105568cf09",
- "sha256:7f64cbd44443e80094309875d4f9c71d0401e966d191c3d469cde4642bc2e031",
- "sha256:82a6a97d9771cb48ae16979c3a3a9a18b600a8505b1115cfe354dfb2054468b4",
- "sha256:84dabd95154f43a2ea80deffec9cb44d2e301e38a0c9d331cc4aa0166fe28ae3",
- "sha256:8676e8fd73141ded15ea586de0b7cda1542960a7b9ad89b2b06428e97125d4fa",
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diff --git a/backend/app/heartbeat_listener_sync.py b/backend/app/heartbeat_listener_sync.py
index c28472d02..2a1793d6d 100644
--- a/backend/app/heartbeat_listener_sync.py
+++ b/backend/app/heartbeat_listener_sync.py
@@ -8,7 +8,6 @@
from app.models.search import SearchCriteria
from app.routers.feeds import FeedDB, FeedListener
from packaging import version
-from pymongo import MongoClient
logging.basicConfig(level=logging.INFO)
logger = logging.getLogger(__name__)
@@ -34,13 +33,10 @@ def callback(ch, method, properties, body):
if owner is not None:
extractor_db.access = {"owner": owner}
- mongo_client = MongoClient(settings.MONGODB_URL)
- db = mongo_client[settings.MONGO_DATABASE]
-
# check to see if extractor already exists
if owner is None:
existing_extractor = EventListenerDB.find_one(
- EventListenerDB.name == msg["queue"], EventListenerDB.access == None
+ EventListenerDB.name == msg["queue"], EventListenerDB.access is None
)
else:
existing_extractor = EventListenerDB.find_one(
diff --git a/backend/app/models/licenses.py b/backend/app/models/licenses.py
index 70ced8226..74dee7e72 100644
--- a/backend/app/models/licenses.py
+++ b/backend/app/models/licenses.py
@@ -73,6 +73,6 @@ class LicenseOption(BaseModel):
description="CC0 (aka CC Zero) is a public dedication tool, which enables creators to give up their copyright and put their works into the worldwide public domain. CC0 enables reusers to distribute, remix, adapt, and build upon the material in any medium or format, with no conditions.",
url="https://creativecommons.org/publicdomain/zero/1.0/",
),
- LicenseOption(id="Custom", description="Create your own custom license", url="")
+ LicenseOption(id="Custom", description="Create your own custom license", url=""),
# Add more standard license options as needed
]
diff --git a/backend/app/routers/authorization.py b/backend/app/routers/authorization.py
index fbef52b29..e1cffe4f0 100644
--- a/backend/app/routers/authorization.py
+++ b/backend/app/routers/authorization.py
@@ -27,7 +27,6 @@
from app.search.index import index_dataset, index_dataset_files
from beanie import PydanticObjectId
from beanie.operators import In, Or
-from bson import ObjectId
from fastapi import APIRouter, Depends
from fastapi.exceptions import HTTPException
diff --git a/backend/app/routers/files.py b/backend/app/routers/files.py
index 5b761d7bc..d4276e0ce 100644
--- a/backend/app/routers/files.py
+++ b/backend/app/routers/files.py
@@ -5,7 +5,6 @@
from app import dependencies
from app.config import settings
-from app.db.dataset.version import remove_file_entry, remove_local_file_entry
from app.db.file.download import _increment_file_downloads
from app.deps.authorization_deps import FileAuthorization
from app.keycloak_auth import get_current_user, get_token
diff --git a/backend/app/routers/jobs.py b/backend/app/routers/jobs.py
index b665e6379..aea07d96f 100644
--- a/backend/app/routers/jobs.py
+++ b/backend/app/routers/jobs.py
@@ -12,7 +12,6 @@
from app.models.pages import Paged, _construct_page_metadata, _get_page_query
from beanie import PydanticObjectId
from beanie.operators import GTE, LT, Or, RegEx
-from bson import ObjectId
from fastapi import APIRouter, Depends, HTTPException
router = APIRouter()
diff --git a/backend/app/routers/licenses.py b/backend/app/routers/licenses.py
index 2584d4079..6b48ca311 100644
--- a/backend/app/routers/licenses.py
+++ b/backend/app/routers/licenses.py
@@ -23,7 +23,7 @@ async def save_license(
license_in: LicenseIn,
user=Depends(get_current_user),
):
- if license_in.holders == None:
+ if license_in.holders is None:
license_in = user
license_db = LicenseDB(**license_in.dict(), creator=user.email)
await license_db.insert()
diff --git a/backend/app/routers/listeners.py b/backend/app/routers/listeners.py
index 06a98367d..6a6c60038 100644
--- a/backend/app/routers/listeners.py
+++ b/backend/app/routers/listeners.py
@@ -263,7 +263,7 @@ async def search_listeners(
if dataset_id is None:
criteria_list.append(
Or(
- EventListenerDB.access == None,
+ EventListenerDB.access is None,
EventListenerDB.access.owner == user_id,
EventListenerDB.access.users == user_id,
In(EventListenerDB.access.groups, user_groups),
@@ -272,7 +272,7 @@ async def search_listeners(
else:
criteria_list.append(
Or(
- EventListenerDB.access == None,
+ EventListenerDB.access is None,
EventListenerDB.access.owner == user_id,
EventListenerDB.access.users == user_id,
In(EventListenerDB.access.groups, user_groups),
@@ -377,7 +377,7 @@ async def get_listeners(
if label:
aggregation_pipeline.append({"$match": {"properties.default_labels": label}})
if alive_only:
- aggregation_pipeline.append({"$match": {"alive": True}}),
+ (aggregation_pipeline.append({"$match": {"alive": True}}),)
if process:
if process == "file":
aggregation_pipeline.append(
@@ -420,7 +420,7 @@ async def get_listeners(
if dataset_id is None:
criteria_list.append(
Or(
- EventListenerDB.access == None,
+ EventListenerDB.access is None,
EventListenerDB.access.owner == user_id,
EventListenerDB.access.users == user_id,
In(EventListenerDB.access.groups, user_groups),
@@ -429,7 +429,7 @@ async def get_listeners(
else:
criteria_list.append(
Or(
- EventListenerDB.access == None,
+ EventListenerDB.access is None,
EventListenerDB.access.owner == user_id,
EventListenerDB.access.users == user_id,
In(EventListenerDB.access.groups, user_groups),
diff --git a/backend/app/routers/public_files.py b/backend/app/routers/public_files.py
index 9b9b18d1e..b981af6af 100644
--- a/backend/app/routers/public_files.py
+++ b/backend/app/routers/public_files.py
@@ -13,7 +13,6 @@
)
from beanie import PydanticObjectId
from beanie.odm.operators.find.logical import Or
-from bson import ObjectId
from fastapi import APIRouter, Depends, Form, HTTPException
from fastapi.responses import StreamingResponse
from fastapi.security import HTTPBearer
diff --git a/backend/app/routers/public_folders.py b/backend/app/routers/public_folders.py
index 5f5605533..6ac8b9172 100644
--- a/backend/app/routers/public_folders.py
+++ b/backend/app/routers/public_folders.py
@@ -1,6 +1,5 @@
from app.models.folders import FolderDBViewList
from beanie import PydanticObjectId
-from bson import ObjectId
from fastapi import APIRouter, HTTPException
router = APIRouter()
diff --git a/backend/app/routers/public_visualization.py b/backend/app/routers/public_visualization.py
index f4094b7b5..305e77881 100644
--- a/backend/app/routers/public_visualization.py
+++ b/backend/app/routers/public_visualization.py
@@ -13,7 +13,6 @@
VisualizationDataOut,
)
from beanie import PydanticObjectId
-from bson import ObjectId
from fastapi import APIRouter, Depends, HTTPException
from fastapi.security import HTTPBearer
from minio import Minio
diff --git a/backend/app/routers/visualization.py b/backend/app/routers/visualization.py
index 7c7feb883..7d83f5c38 100644
--- a/backend/app/routers/visualization.py
+++ b/backend/app/routers/visualization.py
@@ -22,7 +22,6 @@
)
from app.routers.utils import get_content_type
from beanie import PydanticObjectId
-from bson import ObjectId
from fastapi import APIRouter, Depends, File, HTTPException, UploadFile
from fastapi.security import HTTPBearer
from minio import Minio
diff --git a/backend/app/tests/test_dataset_versioning.py b/backend/app/tests/test_dataset_versioning.py
index 2a3a33377..1dc402b31 100644
--- a/backend/app/tests/test_dataset_versioning.py
+++ b/backend/app/tests/test_dataset_versioning.py
@@ -153,7 +153,7 @@ def test_freeze_and_delete(client: TestClient, headers: dict):
f"{settings.API_V2_STR}/datasets/{dataset_id}/freeze/1", headers=headers
)
assert response.status_code == 200
- assert response.json().get("deleted") == True
+ assert response.json().get("deleted") is True
assert response.json().get("id") == dataset_version_1_id
# check the original dataset still exist
diff --git a/backend/heartbeat.Dockerfile b/backend/heartbeat.Dockerfile
index 2de8f4a3b..7c212aaae 100644
--- a/backend/heartbeat.Dockerfile
+++ b/backend/heartbeat.Dockerfile
@@ -1,27 +1,33 @@
-FROM python:3.9
+# Use a Python image with uv pre-installed
+FROM ghcr.io/astral-sh/uv:python3.10-bookworm-slim
-WORKDIR /code
+# Install the project into `/app`
+WORKDIR /app
-# set python env variables
-ENV PYTHONDONTWRITEBYTECODE 1
-ENV PYTHONUNBUFFERED 1
+# Enable bytecode compilation
+ENV UV_COMPILE_BYTECODE=1
-# install pipenv
-RUN pip install pipenv
+# Copy from the cache instead of linking since it's a mounted volume
+ENV UV_LINK_MODE=copy
-# copy required pipenv files
-COPY ./Pipfile ./Pipfile.lock /code/
+# Install the project's dependencies using the lockfile and settings
+RUN --mount=type=cache,target=/root/.cache/uv \
+ --mount=type=bind,source=uv.lock,target=uv.lock \
+ --mount=type=bind,source=pyproject.toml,target=pyproject.toml \
+ uv sync --frozen --no-install-project --no-dev
-# install requirements locally in the project at /code/.venv
-RUN PIPENV_VENV_IN_PROJECT=1 pipenv install --deploy
+# Then, add the rest of the project source code and install it
+# Installing separately from its dependencies allows optimal layer caching
+ADD backend /app
+RUN --mount=type=cache,target=/root/.cache/uv \
+ --mount=type=bind,source=uv.lock,target=uv.lock \
+ --mount=type=bind,source=pyproject.toml,target=pyproject.toml \
+ uv sync --frozen --no-dev
-# add requirements to path
-ENV PATH="/code/.venv/bin:$PATH"
+# Place executables in the environment at the front of the path
+ENV PATH="/app/.venv/bin:$PATH"
-ENV PYTHONPATH=/code
-
-# copy app code at end to make it easier to change code and not have to rebuild requirement layers
-COPY ./app /code/app
-COPY ./heartbeat_listener.py /code/heartbeat_listener.py
+# Reset the entrypoint, don't invoke `uv`
+ENTRYPOINT []
CMD ["python", "heartbeat_listener.py"]
diff --git a/backend/messages.Dockerfile b/backend/messages.Dockerfile
index 597d493d9..5248fd137 100644
--- a/backend/messages.Dockerfile
+++ b/backend/messages.Dockerfile
@@ -1,27 +1,33 @@
-FROM python:3.9
+# Use a Python image with uv pre-installed
+FROM ghcr.io/astral-sh/uv:python3.10-bookworm-slim
-WORKDIR /code
+# Install the project into `/app`
+WORKDIR /app
-# set python env variables
-ENV PYTHONDONTWRITEBYTECODE 1
-ENV PYTHONUNBUFFERED 1
+# Enable bytecode compilation
+ENV UV_COMPILE_BYTECODE=1
-# install pipenv
-RUN pip install pipenv
+# Copy from the cache instead of linking since it's a mounted volume
+ENV UV_LINK_MODE=copy
-# copy required pipenv files
-COPY ./Pipfile ./Pipfile.lock /code/
+# Install the project's dependencies using the lockfile and settings
+RUN --mount=type=cache,target=/root/.cache/uv \
+ --mount=type=bind,source=uv.lock,target=uv.lock \
+ --mount=type=bind,source=pyproject.toml,target=pyproject.toml \
+ uv sync --frozen --no-install-project --no-dev
-# install requirements locally in the project at /code/.venv
-RUN PIPENV_VENV_IN_PROJECT=1 pipenv install --deploy
+# Then, add the rest of the project source code and install it
+# Installing separately from its dependencies allows optimal layer caching
+ADD backend /app
+RUN --mount=type=cache,target=/root/.cache/uv \
+ --mount=type=bind,source=uv.lock,target=uv.lock \
+ --mount=type=bind,source=pyproject.toml,target=pyproject.toml \
+ uv sync --frozen --no-dev
-# add requirements to path
-ENV PATH="/code/.venv/bin:$PATH"
+# Place executables in the environment at the front of the path
+ENV PATH="/app/.venv/bin:$PATH"
-ENV PYTHONPATH=/code
-
-# copy app code at end to make it easier to change code and not have to rebuild requirement layers
-COPY ./app /code/app
-COPY ./message_listener.py /code/message_listener.py
+# Reset the entrypoint, don't invoke `uv`
+ENTRYPOINT []
CMD ["python", "message_listener.py"]
diff --git a/backend/package-lock.json b/backend/package-lock.json
deleted file mode 100644
index ad0a0ec6b..000000000
--- a/backend/package-lock.json
+++ /dev/null
@@ -1,6 +0,0 @@
-{
- "name": "backend",
- "lockfileVersion": 2,
- "requires": true,
- "packages": {}
-}
diff --git a/docker-compose.dev.yml b/docker-compose.dev.yml
index 2b4178357..e396d5f35 100644
--- a/docker-compose.dev.yml
+++ b/docker-compose.dev.yml
@@ -1,5 +1,3 @@
-version: '3.7'
-
# Settings and configurations that are common for all containers
x-minio-common: &minio-common
image: quay.io/minio/minio:RELEASE.2022-01-25T19-56-04Z
@@ -66,7 +64,7 @@ services:
- minio4
postgres:
- image: postgres
+ image: postgres:16
networks:
- clowder2
volumes:
@@ -146,8 +144,7 @@ services:
extractors-heartbeat:
image: "clowder/clowder2-heartbeat:latest"
build:
- context: backend
- dockerfile: heartbeat.Dockerfile
+ dockerfile: backend/heartbeat.Dockerfile
environment:
- MONGODB_URL=mongodb://mongo:27017
- RABBITMQ_HOST=rabbitmq
@@ -162,8 +159,7 @@ services:
extractors-messages:
image: "clowder/clowder2-messages:latest"
build:
- context: backend
- dockerfile: messages.Dockerfile
+ dockerfile: backend/messages.Dockerfile
environment:
- MONGODB_URL=mongodb://mongo:27017
- RABBITMQ_HOST=rabbitmq
diff --git a/docker-compose.extractors.yml b/docker-compose.extractors.yml
index 27b757a0a..8795c2c63 100644
--- a/docker-compose.extractors.yml
+++ b/docker-compose.extractors.yml
@@ -1,5 +1,3 @@
-version: '3.7'
-
services:
name-entity-recognition:
image: socialmediamacroscope/name_entity_recognition_extractor:latest
diff --git a/docker-compose.jupyter-dev.yml b/docker-compose.jupyter-dev.yml
index bea03e898..a0a607da9 100644
--- a/docker-compose.jupyter-dev.yml
+++ b/docker-compose.jupyter-dev.yml
@@ -1,4 +1,3 @@
-version: '3'
services:
jupyterhub:
build:
diff --git a/docker-compose.jupyter.yml b/docker-compose.jupyter.yml
index b8f02659c..17abef8ee 100644
--- a/docker-compose.jupyter.yml
+++ b/docker-compose.jupyter.yml
@@ -1,4 +1,3 @@
-version: '3'
services:
jupyterhub:
build:
diff --git a/docker-compose.previewers.yml b/docker-compose.previewers.yml
index 34f139b3e..4d7a4bab2 100644
--- a/docker-compose.previewers.yml
+++ b/docker-compose.previewers.yml
@@ -1,5 +1,3 @@
-version: '3.7'
-
services:
geoserver:
diff --git a/docker-compose.test.yml b/docker-compose.test.yml
index 0cf4be070..23af06c36 100644
--- a/docker-compose.test.yml
+++ b/docker-compose.test.yml
@@ -1,5 +1,3 @@
-version: '3.7'
-
# Settings and configurations that are common for all minio containers
x-minio-common: &minio-common
image: quay.io/minio/minio:RELEASE.2022-01-25T19-56-04Z
@@ -40,7 +38,7 @@ services:
image: 'clowder/clowder2-backend:github-action'
restart: unless-stopped
build:
- context: ./backend
+ context: backend/Dockerfile
networks:
- clowder2
environment:
@@ -129,7 +127,7 @@ services:
POSTGRES_PASSWORD: password
keycloak:
- image: quay.io/keycloak/keycloak:19.0
+ image: quay.io/keycloak/keycloak:20.0
restart: unless-stopped
networks:
- clowder2
diff --git a/docker-compose.yml b/docker-compose.yml
index f3b4c266c..2fd6d7b17 100644
--- a/docker-compose.yml
+++ b/docker-compose.yml
@@ -1,5 +1,3 @@
-version: '3.7'
-
# Settings and configurations that are common for all minio containers
x-minio-common: &minio-common
image: quay.io/minio/minio:RELEASE.2022-01-25T19-56-04Z
@@ -40,7 +38,7 @@ services:
image: 'clowder/clowder2-backend:2.0.0-beta.3'
restart: unless-stopped
build:
- context: ./backend
+ dockerfile: backend/Dockerfile
networks:
- clowder2
environment:
@@ -102,8 +100,7 @@ services:
extractors-heartbeat:
image: "clowder/clowder2-heartbeat:main"
build:
- context: backend
- dockerfile: heartbeat.Dockerfile
+ dockerfile: backend/heartbeat.Dockerfile
networks:
- clowder2
restart: unless-stopped
@@ -119,8 +116,7 @@ services:
extractors-messages:
image: "clowder/clowder2-messages:main"
build:
- context: backend
- dockerfile: messages.Dockerfile
+ dockerfile: backend/messages.Dockerfile
environment:
MONGODB_URL: mongodb://mongo:27017
RABBITMQ_HOST: ${RABBITMQ_HOST:-rabbitmq}
@@ -184,7 +180,7 @@ services:
- minio4
postgres:
- image: postgres
+ image: postgres:16
restart: unless-stopped
networks:
- clowder2
diff --git a/docs/docs/admins/backups.md b/docs/docs/admins/backups.md
index 8c0c04ce2..299adae3a 100644
--- a/docs/docs/admins/backups.md
+++ b/docs/docs/admins/backups.md
@@ -1 +1 @@
-# Backups
\ No newline at end of file
+# Backups
diff --git a/docs/docs/admins/config.md b/docs/docs/admins/config.md
index 0a7b1bd35..3891e38a8 100644
--- a/docs/docs/admins/config.md
+++ b/docs/docs/admins/config.md
@@ -3,4 +3,4 @@
Each instance of Clowder can be configured at deployment time using the config file. The config file is located
in `backend/app/config.py`. At run time, environmental variables passed into the container will override the defaults
in the config file. When using Docker Compose, the environmental variables are set in the `docker-compose.yml` file or
-in `.env` file. In the case of Kubernetes, the environmental variables are set in the `values.yaml` file.
\ No newline at end of file
+in `.env` file. In the case of Kubernetes, the environmental variables are set in the `values.yaml` file.
diff --git a/docs/docs/devs/architecture.md b/docs/docs/devs/architecture.md
index 392b8fd8f..b51f3838b 100644
--- a/docs/docs/devs/architecture.md
+++ b/docs/docs/devs/architecture.md
@@ -10,9 +10,3 @@ Lines show interactions between containers over the docker network.
Architecture
-I want to `slkdfjslkdjf` include a
-
-- alkdjflskjdf
-- alskdjflksajfd
- - [slkjdf](http://clowder.com)
- -
diff --git a/docs/docs/devs/frontend/lazyloading.md b/docs/docs/devs/frontend/lazyloading.md
index 5653e63fc..14d0ed1dd 100644
--- a/docs/docs/devs/frontend/lazyloading.md
+++ b/docs/docs/devs/frontend/lazyloading.md
@@ -1 +1 @@
-# Webpack Lazy Loading
\ No newline at end of file
+# Webpack Lazy Loading
diff --git a/docs/docs/devs/getstarted.md b/docs/docs/devs/getstarted.md
index 6eb3b72aa..79f1d412f 100644
--- a/docs/docs/devs/getstarted.md
+++ b/docs/docs/devs/getstarted.md
@@ -75,7 +75,9 @@ You can run the backend module using either of the below options:
- Using the PyCharm's run configuration by navigating to `PyCharm -> Run -> Run...` and clicking `uvicorn`. Running
directly from PyCharm helps the developer by providing easy access to its debugging features.
-- From the command line by running `pipenv run uvicorn app.main:app --reload` .
+- From the command line by running `pipenv run uvicorn app.main:app --host 0.0.0.0 --reload`.
+- To run the backend module with multiple workers, similar to production, run
+ `pipenv run uvicorn app.main:app --host 0.0.0.0 --workers 17`
Additional steps/details:
diff --git a/docs/docs/devs/precommits.md b/docs/docs/devs/precommits.md
index 5c559b681..3a780a802 100644
--- a/docs/docs/devs/precommits.md
+++ b/docs/docs/devs/precommits.md
@@ -1,2 +1 @@
# Precommits and Linting
-
diff --git a/docs/docs/devs/uv.md b/docs/docs/devs/uv.md
new file mode 100644
index 000000000..db58ef694
--- /dev/null
+++ b/docs/docs/devs/uv.md
@@ -0,0 +1,12 @@
+# Building with uv
+
+Migrating to https://docs.astral.sh/uv/.
+
+1. [Install uv](https://docs.astral.sh/uv/getting-started/installation/)
+2. Install dependencies: `uv sync --dev`
+3. Activate environment: `source .venv/bin/activate`
+
+To upgrade a package to the latest version matching the settings in pyproject.toml,
+run `uv lock --upgrade-package `.
+
+To upgrade all packages to the latest version matching the settings in pyproject.toml, run `uv lock --upgrade`.
diff --git a/docs/docs/users/index.md b/docs/docs/users/index.md
index 21b025d4b..a8f885175 100644
--- a/docs/docs/users/index.md
+++ b/docs/docs/users/index.md
@@ -57,4 +57,3 @@ In this case, the administrator of the instance will need to enable the account.
## Uploading Data
## Sharing Data
-
diff --git a/package-lock.json b/package-lock.json
deleted file mode 100644
index cc7c1c772..000000000
--- a/package-lock.json
+++ /dev/null
@@ -1,6 +0,0 @@
-{
- "name": "clowder2",
- "lockfileVersion": 2,
- "requires": true,
- "packages": {}
-}
diff --git a/pyproject.toml b/pyproject.toml
new file mode 100644
index 000000000..ec152e4d2
--- /dev/null
+++ b/pyproject.toml
@@ -0,0 +1,29 @@
+[project]
+name = "clowder2"
+version = "2.0.0-beta.4"
+description = """Clowder is a cloud native data management framework to support any research domain. Clowder was
+ developed to help researchers and scientists in data intensive domains manage raw data, complex
+ metadata, and automatic data pipelines."""
+readme = "README.md"
+requires-python = ">=3.10"
+dependencies = ["fastapi==0.95.1", "pydantic==1.10.13", "uvicorn==0.21.1", "motor==3.1.2", "pymongo==4.8.0",
+ "beanie==1.18.0", "passlib==1.7.4", "bcrypt==4.0.1", "pyjwt==2.6.0", "minio==7.1.14", "python-multipart==0.0.6",
+ "email-validator==2.0.0.post2", "python-keycloak==2.15.3", "pika==1.3.1", "aio-pika==9.0.5", "elasticsearch==8.7.0",
+ "rocrate==0.7.0", "itsdangerous==2.1.2", "setuptools"]
+
+[dependency-groups]
+dev = [
+ "requests==2.28.2",
+ "pytest==7.3.1",
+ "pytest-asyncio==0.21.0",
+ "black==23.3.0",
+ "faker==18.4.0",
+ "pika-stubs>=0.1.3",
+ "ruff>=0.8.0",
+ "pre-commit>=4.0.1",
+ "shellcheck-py>=0.10.0.1",
+ "httpx==0.24.0",
+]
+docs = [
+ "mkdocs-material"
+]
diff --git a/scripts/metadata/upload_definitions.py b/scripts/metadata/upload_definitions.py
index 4e1bccb50..5d68c328c 100644
--- a/scripts/metadata/upload_definitions.py
+++ b/scripts/metadata/upload_definitions.py
@@ -1,4 +1,4 @@
-""" Upload metadata definitions from a local directory of JSON definitions.
+"""Upload metadata definitions from a local directory of JSON definitions.
`python upload_definitions.py http://localhost:8000/api/v2 {API_KEY} definitions`
"""
diff --git a/uv.lock b/uv.lock
new file mode 100644
index 000000000..e9e4f1bc1
--- /dev/null
+++ b/uv.lock
@@ -0,0 +1,2074 @@
+version = 1
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