diff --git a/cycode/cli/apps/scan/code_scanner.py b/cycode/cli/apps/scan/code_scanner.py
index 724009a5..d3e325f3 100644
--- a/cycode/cli/apps/scan/code_scanner.py
+++ b/cycode/cli/apps/scan/code_scanner.py
@@ -56,18 +56,19 @@ def scan_disk_files(ctx: typer.Context, paths: tuple[str, ...]) -> None:
             is_cycodeignore_allowed=is_cycodeignore_allowed_by_scan_config(ctx),
         )
 
-        # Add entrypoint.cycode file at root path to mark the scan root (only for single path)
+        # Add entrypoint.cycode file at root path to mark the scan root (only for single path that is a directory)
         if len(paths) == 1:
             root_path = paths[0]
             absolute_root_path = get_absolute_path(root_path)
-            entrypoint_path = get_path_by_os(os.path.join(absolute_root_path, consts.CYCODE_ENTRYPOINT_FILENAME))
-            entrypoint_document = Document(
-                entrypoint_path,
-                '',  # Empty file content
-                is_git_diff_format=False,
-                absolute_path=entrypoint_path,
-            )
-            documents.append(entrypoint_document)
+            if os.path.isdir(absolute_root_path):
+                entrypoint_path = get_path_by_os(os.path.join(absolute_root_path, consts.CYCODE_ENTRYPOINT_FILENAME))
+                entrypoint_document = Document(
+                    entrypoint_path,
+                    '',  # Empty file content
+                    is_git_diff_format=False,
+                    absolute_path=entrypoint_path,
+                )
+                documents.append(entrypoint_document)
 
         add_sca_dependencies_tree_documents_if_needed(ctx, scan_type, documents)
         scan_documents(ctx, documents, get_scan_parameters(ctx, paths))
diff --git a/tests/cli/commands/scan/test_code_scanner.py b/tests/cli/commands/scan/test_code_scanner.py
index 0a43f1c1..8a9f60b7 100644
--- a/tests/cli/commands/scan/test_code_scanner.py
+++ b/tests/cli/commands/scan/test_code_scanner.py
@@ -80,7 +80,9 @@ def test_generate_document() -> None:
 @patch('cycode.cli.apps.scan.code_scanner.get_relevant_documents')
 @patch('cycode.cli.apps.scan.code_scanner.scan_documents')
 @patch('cycode.cli.apps.scan.code_scanner.get_scan_parameters')
+@patch('cycode.cli.apps.scan.code_scanner.os.path.isdir')
 def test_entrypoint_cycode_added_to_documents(
+    mock_isdir: Mock,
     mock_get_scan_parameters: Mock,
     mock_scan_documents: Mock,
     mock_get_relevant_documents: Mock,
@@ -93,6 +95,7 @@ def test_entrypoint_cycode_added_to_documents(
         'progress_bar': MagicMock(),
     }
     mock_get_scan_parameters.return_value = {}
+    mock_isdir.return_value = True  # Path is a directory
 
     mock_documents = [
         Document('/test/path/file1.py', 'content1', is_git_diff_format=False),
@@ -119,3 +122,43 @@ def test_entrypoint_cycode_added_to_documents(
     assert entrypoint_doc.content == ''
     assert entrypoint_doc.is_git_diff_format is False
     assert normpath(entrypoint_doc.absolute_path) == normpath(entrypoint_doc.path)
+
+
+@patch('cycode.cli.apps.scan.code_scanner.get_relevant_documents')
+@patch('cycode.cli.apps.scan.code_scanner.scan_documents')
+@patch('cycode.cli.apps.scan.code_scanner.get_scan_parameters')
+@patch('cycode.cli.apps.scan.code_scanner.os.path.isdir')
+def test_entrypoint_cycode_not_added_for_single_file(
+    mock_isdir: Mock,
+    mock_get_scan_parameters: Mock,
+    mock_scan_documents: Mock,
+    mock_get_relevant_documents: Mock,
+) -> None:
+    """Test that entrypoint.cycode file is NOT added when path is a single file."""
+    # Arrange
+    mock_ctx = MagicMock()
+    mock_ctx.obj = {
+        'scan_type': consts.SAST_SCAN_TYPE,
+        'progress_bar': MagicMock(),
+    }
+    mock_get_scan_parameters.return_value = {}
+    mock_isdir.return_value = False  # Path is a file, not a directory
+
+    mock_documents = [
+        Document('/test/path/file1.py', 'content1', is_git_diff_format=False),
+    ]
+    mock_get_relevant_documents.return_value = mock_documents.copy()
+    test_path = '/Users/test/file.py'
+
+    # Act
+    scan_disk_files(mock_ctx, (test_path,))
+
+    # Assert
+    call_args = mock_scan_documents.call_args
+    documents_passed = call_args[0][1]
+
+    # Verify entrypoint document was NOT added
+    entrypoint_docs = [doc for doc in documents_passed if doc.path.endswith(consts.CYCODE_ENTRYPOINT_FILENAME)]
+    assert len(entrypoint_docs) == 0
+    # Verify only the original documents are present
+    assert len(documents_passed) == len(mock_documents)