NeuroML2 improvements#396

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dilawar wants to merge 19 commits intoBhallaLab:masterfrom

dilawar:neuroml2

Commits on Mar 10, 2020

saving data to npy format in streamer is now bug free. Added three tests: 2 python and 1 at cpp level.
Dilawar Singh
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boost::filesystem is no longer used even when boost is used.
Dilawar Singh
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Default tick for Streamer is 10s.
Dilawar Singh
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Able to run nml2 example with python3 (BhallaLab/moose#253).
Dilawar Singh
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Able to run nml2 example with python3 (BhallaLab/moose#253).
Dilawar Singh
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moose.server uses the standard logger and does not set global logging to
Dilawar Singh
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Got reader.py from https://raw.githubusercontent.com/pgleeson/moose-core/9834e98744610d9a920d1b63abfe128794abf16f/python/moose/neuroml2/reader.py
Dilawar Singh
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Pulled changes from https://github.com/pgleeson/moose-core/commit/29e089aa950c0cf9d277edaadd77eb9e4d301538
Dilawar Singh
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Merge branch 'neuroml2' of github.com:dilawar/moose-core into neuroml2
Dilawar Singh
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Fixes after merge.
Dilawar Singh
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Commits on Mar 11, 2020

Merge remote-tracking branch 'bhallalab/master' into neuroml2
Dilawar Singh
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Some more tweaks to get CaConc working with NML.
Dilawar Singh
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Commits on Mar 12, 2020

- If nml user has set id of the gate to be 'x', 'y' or 'z' then load the dynamics into HHChannels's gateX, gateY, or gateZ dyamics.
Dilawar Singh
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Commits on Mar 13, 2020

- If channels are named 'm', 'n', load them into 'X', 'Y', 'Z' in the
Dilawar Singh
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pylint fixes.
Dilawar Singh
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Added missing nml2 files.
Dilawar Singh
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Needs a xml convertor to conver NML to MOOSEML.
Dilawar Singh
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Added some more tests. Basically parsing NML2 files. Whether they work
Dilawar Singh
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Commits on Apr 6, 2020

Merge branch 'master' into neuroml2
dilawar
authored