Update main with latest staging

.github/workflows/build-deploy-neurojsonio.yml

@@ -0,0 +1,41 @@
+name: Deploy to Production
+
+on:
+  push:
+    branches:
+      - main
+  pull_request:
+    branches:
+      - main
+
+jobs:
+  deploy:
+    runs-on: ubuntu-22.04
+    env:
+      CI: false
+
+    steps:
+      - name: Check out the repository
+        uses: actions/checkout@v3
+
+      - name: Install dependencies
+        run: yarn install --frozen-lockfile
+
+      - name: Build React App for production
+        run: |
+          echo "Building for production at root /"
+          PUBLIC_URL="/" yarn build
+
+      - name: Copy JS libraries
+        run: |
+          mkdir -p build/js
+          cp -r public/js/* build/js/
+
+      - name: Deploy to neurojson.io
+        uses: NeuroJSON/SFTP-Deploy-Action@v1.2.5
+        with:
+          server: ${{ secrets.NEUROJ_IO_SERVER }}
+          username: ${{ secrets.NEUROJ_SERVER_USER }}
+          ssh_private_key: ${{ secrets.NEUROJ_SERVER_SSH_KEY }}
+          local_path: "./build/*"
+          remote_path: "${{ secrets.NEUROJ_IO_CI_PATH }}"

.github/workflows/build-deploy-zodiac.yml

@@ -0,0 +1,50 @@
+name: Deploy Zodiac Server
+
+on:
+  push:
+    branches:
+      - dev-fan
+      - dev_mario
+      - fangq
+      - staging
+
+jobs:
+  deploy:
+    runs-on: ubuntu-22.04
+    env:
+      CI: false
+
+    steps:
+      - name: Check out the repository
+        uses: actions/checkout@v3
+
+      - name: Install dependencies
+        run: yarn install --frozen-lockfile
+
+      - name: Determine Branch Name
+        id: get_branch
+        run: echo "BRANCH_NAME=${GITHUB_REF#refs/heads/}" >> $GITHUB_ENV
+
+      - name: Print GitHub Runner Public IP
+        run: |
+          echo "GitHub runner public IP:"
+          curl https://api.ipify.org
+
+      - name: Build React App with Dynamic PUBLIC_URL
+        run: |
+          echo "Building for /dev/${{ env.BRANCH_NAME }}/"
+          PUBLIC_URL="/dev/${{ env.BRANCH_NAME }}/" yarn build
+
+      - name: Copy JS libraries (jdata, bjdata etc.)
+        run: |
+          mkdir -p build/js
+          cp -r public/js/* build/js/
+
+      - name: Copy package to server
+        uses: NeuroJSON/SFTP-Deploy-Action@v1.2.5
+        with:
+          server: ${{ secrets.NEUROJ_SERVER }}
+          username: ${{ secrets.NEUROJ_SERVER_USER }}
+          ssh_private_key: ${{ secrets.NEUROJ_SERVER_SSH_KEY }}
+          local_path: "./build/*"
+          remote_path: "${{ secrets.NEUROJ_CI_PATH }}/${{ env.BRANCH_NAME }}"

.github/workflows/validate.yml

@@ -0,0 +1,32 @@
+name: Validate NeuroJson_io Project
+
+on:
+  pull_request:
+    branches:
+      - "*"
+
+jobs:
+  validate:
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Check out the repository
+        uses: actions/checkout@v3
+
+      - name: Set up Node.js
+        uses: actions/setup-node@v3
+        with:
+          node-version: "18"
+
+      - name: Install dependencies
+        run: yarn install
+
+      # - name: Run Linter (Report Issues)
+      #   run: yarn lint
+
+      - name: Compile TypeScript
+        run: |
+          PUBLIC_URL="/dev/${{ github.head_ref }}/" yarn build
+
+      - name: Run Security Audit (non-blocking)
+        run: yarn audit --level moderate || echo "Audit failed with moderate issues, continuing anyway."

.gitignore

@@ -1,3 +1,6 @@
 .env
 node_modules
-.DS_Store
+.DS_Store
+package-lock.json
+
+build

build-log.txt

@@ -0,0 +1,32 @@
+yarn run v1.22.22
+$ craco build --debug
+Creating an optimized production build...
+Compiled with warnings.
+
+Critical dependency: the request of a dependency is an expression
+
+Search for the keywords to learn more about each warning.
+To ignore, add // eslint-disable-next-line to the line before.
+
+File sizes after gzip:
+
+  717.18 kB  build/static/js/main.30f0cad2.js
+
+The bundle size is significantly larger than recommended.
+Consider reducing it with code splitting: https://goo.gl/9VhYWB
+You can also analyze the project dependencies: https://goo.gl/LeUzfb
+
+The project was built assuming it is hosted at /.
+You can control this with the homepage field in your package.json.
+
+The build folder is ready to be deployed.
+You may serve it with a static server:
+
+  yarn global add serve
+  serve -s build
+
+Find out more about deployment here:
+
+  https://cra.link/deployment
+
+Done in 15.95s.

craco.config.js

@@ -0,0 +1,21 @@
+module.exports = {
+  webpack: {
+    configure: (webpackConfig) => {
+      webpackConfig.resolve.fallback = {
+        ...webpackConfig.resolve.fallback,
+        path: require.resolve("path-browserify"),
+      };
+
+      webpackConfig.module.rules.push({
+        test: /\.js$/,
+        parser: {
+          requireEnsure: false, // Prevents Webpack from treating require() as a critical dependency
+        },
+      });
+
+      webpackConfig.ignoreWarnings = [/the request of a dependency is an expression/];
+
+      return webpackConfig;
+    },
+  },
+};

package.json

@@ -4,35 +4,61 @@
   "private": true,
   "dependencies": {
     "3d-force-graph": "^1.73.4",
+    "@babel/helpers": "7.26.10",
+    "@babel/runtime": "7.26.10",
+    "@craco/craco": "^7.1.0",
     "@emotion/react": "^11.11.1",
     "@emotion/styled": "^11.11.0",
     "@mui/icons-material": "^5.14.3",
     "@mui/material": "^5.14.4",
     "@reduxjs/toolkit": "^1.9.5",
+    "@rjsf/core": "^5.24.8",
+    "@rjsf/mui": "^5.24.8",
+    "@rjsf/utils": "^5.24.8",
+    "@rjsf/validator-ajv8": "^5.24.8",
     "@testing-library/jest-dom": "^5.14.1",
     "@testing-library/react": "^13.0.0",
     "@testing-library/user-event": "^13.2.1",
     "@types/jest": "^27.0.1",
+    "@types/numjs": "^0.16.8",
     "@types/react": "^18.0.0",
     "@types/react-dom": "^18.0.0",
-    "@types/three": "^0.169.0",
+    "@types/three": "^0.176.0",
+    "ajv": "^8",
+    "ajv-keywords": "^5",
     "axios": "^1.4.0",
+    "bda": "^1.0.0",
+    "bjd": "^0.3.2",
+    "buffer": "6.0.3",
     "dayjs": "^1.11.10",
+    "jquery": "^3.7.1",
+    "json-stringify-safe": "^5.0.1",
     "jwt-decode": "^3.1.2",
+    "lzma": "^2.3.2",
+    "numjs": "^0.16.1",
+    "pako": "1.0.11",
+    "path-browserify": "^1.0.1",
     "query-string": "^8.1.0",
     "react": "^18.2.0",
     "react-dom": "^18.2.0",
+    "react-json-view": "^1.21.3",
     "react-redux": "^8.1.2",
     "react-router-dom": "^6.15.0",
-    "react-scripts": "5.0.1",
-    "three": "^0.169.0",
+    "react-scripts": "^5.0.1",
+    "react-syntax-highlighter": "^15.6.1",
+    "sharp": "^0.33.5",
+    "stats-js": "^1.0.1",
+    "stats.js": "0.17.0",
+    "three": "0.145.0",
     "typescript": "^5.1.6",
+    "uplot": "1.6.17",
     "web-vitals": "^2.1.0"
   },
   "devDependencies": {
     "@babel/plugin-proposal-private-property-in-object": "^7.21.11",
     "@trivago/prettier-plugin-sort-imports": "^4.2.0",
     "@types/node": "^20.5.7",
+    "@types/pako": "^2.0.3",
     "@typescript-eslint/eslint-plugin": "^5.31.0",
     "@typescript-eslint/parser": "^5.31.0",
     "eslint": "^8.21.0",
@@ -46,10 +72,11 @@
     "prettier": "^2.3.1"
   },
   "scripts": {
-    "start": "react-scripts start",
-    "build": "react-scripts build",
-    "test": "react-scripts test",
-    "eject": "react-scripts eject"
+    "start": "craco start || react-scripts start",
+    "build": "craco build || react-scripts build",
+    "test": "craco test || react-scripts test",
+    "eject": "craco eject || react-scripts eject",
+    "lint": "eslint 'src/**/*.{js,jsx,ts,tsx}' --ext .js,.jsx,.ts,.tsx"
   },
   "browserslist": {
     "production": [
@@ -62,5 +89,11 @@
       "last 1 firefox version",
       "last 1 safari version"
     ]
+  },
+  "resolutions": {
+    "postcss": "^8.4.31",
+    "nth-check": "^2.0.1",
+    "@babel/runtime": "7.26.10",
+    "3d-force-graph": "1.74.6"
   }
 }

public/.htaccess

@@ -0,0 +1,9 @@
+RedirectMatch 404 /\.git
+<IfModule mod_rewrite.c>
+  RewriteEngine On 
+  RewriteBase / 
+  RewriteCond %{REQUEST_FILENAME} -f [OR] 
+  RewriteCond %{REQUEST_FILENAME} -d 
+  RewriteRule ^ - [L] 
+  RewriteRule ^ index.html [L]
+</IfModule>