Popular repositories Loading

1. RS-FISH RS-FISH Public

   Tool for precise, interactive, fast and scalable FISH spot detection

   Java 50 14

2. STIM STIM Public

   Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.

   Java 29 1

3. multiview-simulation multiview-simulation Public

   Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise

   Java 12 5

4. dl-cell-counting dl-cell-counting Public

   Repo contains the implementation of the count-ception CNN (Tensorflow + Keras)

   Jupyter Notebook 11 4

5. RS-FISH-Spark RS-FISH-Spark Public

   Spark version of RS-FISH that can analyze large N5 volumes in a distributed fashion locally, on the cluster or in the cloud

   Java 8 1

6. FRC-QE FRC-QE Public

   Fourier Ring Correlation-based estimation of clearing quality

   HTML 6 2