Follow-ups from the coding session on 2025-03-11

[lguerard]

No description provided.

[ehrenfeu]

The remaining linting error is only for BDV related files.

And with merging #39 into devel, and devel into this branch in f0a1c9c, the remaining linting errors have vanished!

💪🏼 🚀

[ehrenfeu]

Remaining open requests (plus the one attached below to this very comment):

• docstring for calculate_mean_and_stdv(): #49 (comment)
• move pad_number() to strtools: #49 (comment)
• rename apply_background_subtraction to rollingball_background_subtraction or apply_rollingball_bg_subtraction: #49 (comment)

[codecov]

Codecov Report

Attention: Patch coverage is 7.05882% with 237 lines in your changes missing coverage. Please review.

Project coverage is 25.06%. Comparing base (b02198e) to head (8cef7bf).
Report is 73 commits behind head on devel.

Files with missing lines	Patch %	Lines
src/imcflibs/imagej/bioformats.py	2.17%	90 Missing ⚠️
src/imcflibs/imagej/misc.py	20.00%	56 Missing ⚠️
src/imcflibs/imagej/omerotools.py	0.00%	38 Missing ⚠️
src/imcflibs/imagej/processing.py	0.00%	31 Missing ⚠️
src/imcflibs/imagej/labelimage.py	0.00%	16 Missing ⚠️
src/imcflibs/imagej/objects3d.py	0.00%	3 Missing ⚠️
src/imcflibs/pathtools.py	50.00%	2 Missing ⚠️
src/imcflibs/imagej/shading.py	0.00%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##            devel      #49      +/-   ##
==========================================
- Coverage   28.19%   25.06%   -3.14%     
==========================================
  Files          24       25       +1     
  Lines        1426     1656     +230     
==========================================
+ Hits          402      415      +13     
- Misses       1024     1241     +217     

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[ehrenfeu]

@lguerard how about we merge this PR now and address the remaining tasks in separate issues later on?

Remaining open requests (plus the one attached below to this very comment):

* docstring for `calculate_mean_and_stdv()`: [Add more methods following the coding session of 2025 03 11 #49 (comment)](https://github.com/imcf/python-imcflibs/pull/49#discussion_r2012334834)

* move `pad_number()` to `strtools`: [Add more methods following the coding session of 2025 03 11 #49 (comment)](https://github.com/imcf/python-imcflibs/pull/49#discussion_r2004100289)

* rename `apply_background_subtraction` to `rollingball_background_subtraction` or `apply_rollingball_bg_subtraction`: [Add more methods following the coding session of 2025 03 11 #49 (comment)](https://github.com/imcf/python-imcflibs/pull/49#discussion_r2010350151)