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Don't accept NaN slit widths #413

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Merged
stephen-riggs merged 1 commit into from
Nov 29, 2024
Merged

Don't accept NaN slit widths #413

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4 changes: 3 additions & 1 deletion src/murfey/client/contexts/tomo.py
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Original file line number Diff line number Diff line change
Expand Up @@ -745,7 +745,9 @@
mdoc_metadata["tag"] = str(self._basepath)
mdoc_metadata["tilt_series_tag"] = metadata_file.stem
mdoc_metadata["exposure_time"] = float(mdoc_data_block["ExposureTime"])
mdoc_metadata["slit_width"] = float(mdoc_data_block["FilterSlitAndLoss"][0])
slit_width = mdoc_data_block["FilterSlitAndLoss"][0]

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Added line #L748 was not covered by tests
if slit_width.lower() != "nan":
mdoc_metadata["slit_width"] = float(slit_width)

Check warning on line 750 in src/murfey/client/contexts/tomo.py

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src/murfey/client/contexts/tomo.py#L750 

Added line #L750 was not covered by tests
mdoc_metadata["file_extension"] = (
f".{mdoc_data_block['SubFramePath'].split('.')[-1]}"
)
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