Added FastAPI endpoint to trigger image alignment and merging job for CLEM workflow and updated function parameters #420
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…of CLEM workflow for a given image series
Codecov ReportAttention: Patch coverage is
Additional details and impacted files@@ Coverage Diff @@
## main #420 +/- ##
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- Coverage 27.25% 26.37% -0.89%
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Files 75 75
Lines 10002 10897 +895
Branches 1319 1638 +319
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+ Hits 2726 2874 +148
- Misses 7186 7910 +724
- Partials 90 113 +23 |
tieneupin
changed the title
| images: list[Path] | ||
| metadata: Path | ||
| # Optional processing parameters | ||
| crop_to_n_frames: Optional[int] = None |
Contributor
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As noted on the cryoemservices PR, these could possibly default to something else rather than None
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Do these still apply after our discussion as a group earlier, or are you have to have them as None?
| images: list[Path], | ||
| metadata: Path, | ||
| # Optional processing parameters | ||
| crop_to_n_frames: Optional[int] = None, |
Contributor
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As above. Something to consider
…pdated validation checks accordingly
… to both the LIF and TIFF workflows
… to 'processing_params'
d-j-hatton
approved these changes
Jan 7, 2025
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Also migrates the Pydantic model associated with the TIFF file processing workflow to the CLEM API page, to keep supporting objects localised.
This PR will need to be deployed alongside this PR due to breaking changes.